vg
tools for working with variation graphs
Loading...
Searching...
No Matches
vg::SurjectingAlignmentEmitter Member List

This is the complete list of members for vg::SurjectingAlignmentEmitter, including all inherited members.

backingvg::SurjectingAlignmentEmitterprotected
emit_extra_message(const std::string &tag, std::string &&data)vg::SurjectingAlignmentEmittervirtual
emit_mapped_pairs(vector< vector< Alignment > > &&alns1_batch, vector< vector< Alignment > > &&alns2_batch, vector< int64_t > &&tlen_limit_batch)vg::SurjectingAlignmentEmittervirtual
emit_mapped_singles(vector< vector< Alignment > > &&alns_batch)vg::SurjectingAlignmentEmittervirtual
emit_pairs(vector< Alignment > &&aln1_batch, vector< Alignment > &&aln2_batch, vector< int64_t > &&tlen_limit_batch)vg::SurjectingAlignmentEmittervirtual
emit_singles(vector< Alignment > &&aln_batch)vg::SurjectingAlignmentEmittervirtual
pathsvg::SurjectingAlignmentEmitterprotected
surject_subpath_globalvg::SurjectingAlignmentEmitter
SurjectingAlignmentEmitter(const PathPositionHandleGraph *graph, unordered_set< path_handle_t > paths, unique_ptr< AlignmentEmitter > &&backing, bool prune_suspicious_anchors=false, bool add_graph_alignment_tag=false, bool report_supplementary=false, bool add_off_ref_position_tag=false, bool left_align=false)vg::SurjectingAlignmentEmitter
surjectorvg::SurjectingAlignmentEmitterprotected