---
name: grappa
version: 2.0
origin: biology/grappa
comment: Genome Rearrangements Analysis and Phylogeny Software
arch: freebsd:9:x86:64
www: http://www.cs.unm.edu/~moret/GRAPPA/
maintainer: ports@FreeBSD.org
prefix: /usr/local
licenselogic: single
flatsize: 230552
desc: "GRAPPA: Genome Rearrangements Analysis under Parsimony and other\nPhylogenetic
  Algorithms\n\t\t\t\t     \nThis suite of programs implements the approach to phylogeny\nreconstruction
  from gene orders described in the paper\n   Moret, B.M.E., Wyman, S., Bader, D.A.,
  Warnow, T., and Yan, M.,\n   ``A detailed study of breakpoint analysis,''\n   Proc.
  6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001).\nIn its current state, \"grappa\"
  allows one to explore either the\nspace of all possible trees on n labelled leaves
  or the space of all\nsuch trees that obey (are refinements of) a particular constraint
  tree.\n\n\"invdist\" takes the first two genomes in the input file and returns\ntheir
  inversion distance.\n\"distmat\" prints the inversion and breakpoint distance matrices.
  \n\nWWW: http://www.cs.unm.edu/~moret/GRAPPA/\n"
categories: [biology]
files:
  /usr/local/bin/distmat: '-'
  /usr/local/bin/grappa: 0ebc6930b0edc9aaf32bffa80e8ef4c61e03b8434de43e4b6f79cd44fbcba977
  /usr/local/bin/invdist: '-'
scripts: {}
